{
  "_id": "6a4a317d96bf500e17672b58",
  "Package": "amen",
  "Title": "Additive and Multiplicative Effects Models for Networks and\nRelational Data",
  "Version": "1.4.4",
  "Authors@R": "c(person(\"Peter\",\"Hoff\",role=c(\"aut\",\"cre\"),\nemail=\"peter.hoff@duke.edu\"),\nperson(\"Bailey\",\"Fosdick\",role=c(\"aut\")),\nperson(\"Alex\",\"Volfovsky\",role=c(\"aut\")),\nperson(\"Yanjun\",\"He\",role=c(\"ctb\")) )",
  "Description": "Analysis of dyadic network and relational data using\nadditive and multiplicative effects (AME) models. The basic\nmodel includes regression terms, the covariance structure of\nthe social relations model (Warner, Kenny and Stoto (1979)\n<DOI:10.1037/0022-3514.37.10.1742>, Wong (1982)\n<DOI:10.2307/2287296>), and multiplicative factor models\n(Hoff(2009) <DOI:10.1007/s10588-008-9040-4>). Several different\nlink functions accommodate different relational data\nstructures, including binary/network data, normal relational\ndata, zero-inflated positive outcomes using a tobit model,\nordinal relational data and data from fixed-rank nomination\nschemes. Several of these link functions are discussed in Hoff,\nFosdick, Volfovsky and Stovel (2013) <DOI:10.1017/nws.2013.17>.\nDevelopment of this software was supported in part by NIH grant\nR01HD067509.",
  "Maintainer": "Peter Hoff <peter.hoff@duke.edu>",
  "URL": "https://github.com/pdhoff/amen",
  "BugReports": "https://github.com/pdhoff/amen/issues",
  "License": "GPL-3",
  "Date": "2020-12-01",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.1",
  "Repository": "https://pdhoff.r-universe.dev",
  "Date/Publication": "2020-12-16 19:17:52 UTC",
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  "RemoteRef": "HEAD",
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  "Packaged": {
    "Date": "2026-07-05 10:24:18 UTC",
    "User": "root"
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  "Author": "Peter Hoff [aut, cre],\nBailey Fosdick [aut],\nAlex Volfovsky [aut],\nYanjun He [ctb]",
  "_user": "pdhoff",
  "_type": "src",
  "_file": "amen_1.4.4.tar.gz",
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  "_expires": "2026-10-13T10:27:07.000Z",
  "_created": "2026-07-05T10:24:18.000Z",
  "_published": "2026-07-05T10:27:09.421Z",
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  "_buildurl": "https://github.com/r-universe/pdhoff/actions/runs/28737300300",
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    "extra/citation.html",
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    "extra/contents.json",
    "extra/NEWS.html",
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  "_realowner": "pdhoff",
  "_cranurl": true,
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    },
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      "date": "2020-12-16"
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      "date": "2024-02-20"
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    "ame",
    "ame_rep",
    "circplot",
    "design_array",
    "el2sm",
    "gofstats",
    "ldZgbme",
    "llsrmRho",
    "mhalf",
    "netplot",
    "precomputeX",
    "raSab_bin_fc",
    "raSab_cbin_fc",
    "raSab_frn_fc",
    "rbeta_ab_fc",
    "rbeta_ab_rep_fc",
    "rmvnorm",
    "rrho_fc",
    "rrho_mh",
    "rrho_mh_rep",
    "rs2_fc",
    "rs2_rep_fc",
    "rSab_fc",
    "rSuv_fc",
    "rUV_fc",
    "rUV_rep_fc",
    "rUV_sym_fc",
    "rwish",
    "rZ_bin_fc",
    "rZ_cbin_fc",
    "rZ_frn_fc",
    "rZ_nrm_fc",
    "rZ_ord_fc",
    "rZ_rrl_fc",
    "rZ_tob_fc",
    "simY_bin",
    "simY_frn",
    "simY_nrm",
    "simY_ord",
    "simY_rrl",
    "simY_tob",
    "simZ",
    "sm2el",
    "Xbeta",
    "xnet",
    "zscores"
  ],
  "_datasets": [
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      "name": "addhealthc3",
      "title": "AddHealth community 3 data",
      "object": "addhealthc3",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "addhealthc9",
      "title": "AddHealth community 9 data",
      "object": "addhealthc9",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "coldwar",
      "title": "Cold War data",
      "object": "coldwar",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "comtrade",
      "title": "Comtrade data",
      "object": "comtrade",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "dutchcollege",
      "title": "Dutch college data",
      "object": "dutchcollege",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "IR90s",
      "title": "International relations in the 90s",
      "object": "IR90s",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "lazegalaw",
      "title": "Lazega's law firm data",
      "object": "lazegalaw",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "sampsonmonks",
      "title": "Sampson's monastery data",
      "object": "sampsonmonks",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "sheep",
      "title": "Sheep dominance data",
      "object": "sheep",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
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      "name": "YX_bin",
      "title": "binary relational data and covariates",
      "object": "YX_bin",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "YX_bin_long",
      "title": "binary relational data and covariates",
      "object": "YX_bin_long",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "YX_cbin",
      "title": "Censored binary nomination data and covariates",
      "object": "YX_cbin",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "YX_frn",
      "title": "Fixed rank nomination data and covariates",
      "object": "YX_frn",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "YX_nrm",
      "title": "normal relational data and covariates",
      "object": "YX_nrm",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "YX_ord",
      "title": "ordinal relational data and covariates",
      "object": "YX_ord",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "YX_rrl",
      "title": "row-specific ordinal relational data and covariates",
      "object": "YX_rrl",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "amen-package",
      "title": "Additive and Multiplicative Effects Models for Networks and Relational Data",
      "topics": [
        "amen-package",
        "amen"
      ]
    },
    {
      "page": "addhealthc3",
      "title": "AddHealth community 3 data",
      "topics": [
        "addhealthc3"
      ]
    },
    {
      "page": "addhealthc9",
      "title": "AddHealth community 9 data",
      "topics": [
        "addhealthc9"
      ]
    },
    {
      "page": "addlines",
      "title": "Add lines",
      "topics": [
        "addlines"
      ]
    },
    {
      "page": "ame",
      "title": "AME model fitting routine",
      "topics": [
        "ame"
      ]
    },
    {
      "page": "ame_rep",
      "title": "AME model fitting routine for replicated relational data",
      "topics": [
        "ame_rep"
      ]
    },
    {
      "page": "circplot",
      "title": "Circular network plot",
      "topics": [
        "circplot"
      ]
    },
    {
      "page": "coldwar",
      "title": "Cold War data",
      "topics": [
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      ]
    },
    {
      "page": "comtrade",
      "title": "Comtrade data",
      "topics": [
        "comtrade"
      ]
    },
    {
      "page": "design_array",
      "title": "Computes the design socioarray of covariate values",
      "topics": [
        "design_array"
      ]
    },
    {
      "page": "dutchcollege",
      "title": "Dutch college data",
      "topics": [
        "dutchcollege"
      ]
    },
    {
      "page": "el2sm",
      "title": "Edgelist to sociomatrix",
      "topics": [
        "el2sm"
      ]
    },
    {
      "page": "gofstats",
      "title": "Goodness of fit statistics",
      "topics": [
        "gofstats"
      ]
    },
    {
      "page": "IR90s",
      "title": "International relations in the 90s",
      "topics": [
        "IR90s"
      ]
    },
    {
      "page": "lazegalaw",
      "title": "Lazega's law firm data",
      "topics": [
        "lazegalaw"
      ]
    },
    {
      "page": "ldZgbme",
      "title": "log density for GBME models",
      "topics": [
        "ldZgbme"
      ]
    },
    {
      "page": "llsrmRho",
      "title": "SRM log likelihood evaluated on a grid of rho-values",
      "topics": [
        "llsrmRho"
      ]
    },
    {
      "page": "mhalf",
      "title": "Symmetric square root of a matrix",
      "topics": [
        "mhalf"
      ]
    },
    {
      "page": "netplot",
      "title": "Network plotting",
      "topics": [
        "netplot"
      ]
    },
    {
      "page": "plot.ame",
      "title": "Plot results of an AME object",
      "topics": [
        "plot.ame"
      ]
    },
    {
      "page": "precomputeX",
      "title": "Precomputation of design matrix quantities.",
      "topics": [
        "precomputeX"
      ]
    },
    {
      "page": "raSab_bin_fc",
      "title": "Simulate a and Sab from full conditional distributions under bin likelihood",
      "topics": [
        "raSab_bin_fc"
      ]
    },
    {
      "page": "raSab_cbin_fc",
      "title": "Simulate a and Sab from full conditional distributions under the cbin likelihood",
      "topics": [
        "raSab_cbin_fc"
      ]
    },
    {
      "page": "raSab_frn_fc",
      "title": "Simulate a and Sab from full conditional distributions under frn likelihood",
      "topics": [
        "raSab_frn_fc"
      ]
    },
    {
      "page": "rbeta_ab_fc",
      "title": "Conditional simulation of additive effects and regression coefficients",
      "topics": [
        "rbeta_ab_fc"
      ]
    },
    {
      "page": "rbeta_ab_rep_fc",
      "title": "Gibbs sampling of additive row and column effects and regression coefficient with independent replicate relational data",
      "topics": [
        "rbeta_ab_rep_fc"
      ]
    },
    {
      "page": "rmvnorm",
      "title": "Simulation from a multivariate normal distribution",
      "topics": [
        "rmvnorm"
      ]
    },
    {
      "page": "rrho_fc",
      "title": "Griddy Gibbs update for dyadic correlation",
      "topics": [
        "rrho_fc"
      ]
    },
    {
      "page": "rrho_mh",
      "title": "Metropolis update for dyadic correlation",
      "topics": [
        "rrho_mh"
      ]
    },
    {
      "page": "rrho_mh_rep",
      "title": "Metropolis update for dyadic correlation with independent replicate data",
      "topics": [
        "rrho_mh_rep"
      ]
    },
    {
      "page": "rs2_fc",
      "title": "Gibbs update for dyadic variance",
      "topics": [
        "rs2_fc"
      ]
    },
    {
      "page": "rs2_rep_fc",
      "title": "Gibbs update for dyadic variance with independent replicate relational data",
      "topics": [
        "rs2_rep_fc"
      ]
    },
    {
      "page": "rSab_fc",
      "title": "Gibbs update for additive effects covariance",
      "topics": [
        "rSab_fc"
      ]
    },
    {
      "page": "rSuv_fc",
      "title": "Gibbs update for multiplicative effects covariance",
      "topics": [
        "rSuv_fc"
      ]
    },
    {
      "page": "rUV_fc",
      "title": "Gibbs sampling of U and V",
      "topics": [
        "rUV_fc"
      ]
    },
    {
      "page": "rUV_rep_fc",
      "title": "Gibbs sampling of U and V",
      "topics": [
        "rUV_rep_fc"
      ]
    },
    {
      "page": "rUV_sym_fc",
      "title": "Gibbs sampling of U and V",
      "topics": [
        "rUV_sym_fc"
      ]
    },
    {
      "page": "rwish",
      "title": "Simulation from a Wishart distribution",
      "topics": [
        "rwish"
      ]
    },
    {
      "page": "rZ_bin_fc",
      "title": "Simulate Z based on a probit model",
      "topics": [
        "rZ_bin_fc"
      ]
    },
    {
      "page": "rZ_cbin_fc",
      "title": "Simulate Z given fixed rank nomination data",
      "topics": [
        "rZ_cbin_fc"
      ]
    },
    {
      "page": "rZ_frn_fc",
      "title": "Simulate Z given fixed rank nomination data",
      "topics": [
        "rZ_frn_fc"
      ]
    },
    {
      "page": "rZ_nrm_fc",
      "title": "Simulate missing values in a normal AME model",
      "topics": [
        "rZ_nrm_fc"
      ]
    },
    {
      "page": "rZ_ord_fc",
      "title": "Simulate Z given the partial ranks",
      "topics": [
        "rZ_ord_fc"
      ]
    },
    {
      "page": "rZ_rrl_fc",
      "title": "Simulate Z given relative rank nomination data",
      "topics": [
        "rZ_rrl_fc"
      ]
    },
    {
      "page": "rZ_tob_fc",
      "title": "Simulate Z based on a tobit model",
      "topics": [
        "rZ_tob_fc"
      ]
    },
    {
      "page": "sampsonmonks",
      "title": "Sampson's monastery data",
      "topics": [
        "sampsonmonks"
      ]
    },
    {
      "page": "sheep",
      "title": "Sheep dominance data",
      "topics": [
        "sheep"
      ]
    },
    {
      "page": "simY_bin",
      "title": "Simulate a network, i.e. a binary relational matrix",
      "topics": [
        "simY_bin"
      ]
    },
    {
      "page": "simY_frn",
      "title": "Simulate an relational matrix based on a fixed rank nomination scheme",
      "topics": [
        "simY_frn"
      ]
    },
    {
      "page": "simY_nrm",
      "title": "Simulate a normal relational matrix",
      "topics": [
        "simY_nrm"
      ]
    },
    {
      "page": "simY_ord",
      "title": "Simulate an ordinal relational matrix",
      "topics": [
        "simY_ord"
      ]
    },
    {
      "page": "simY_rrl",
      "title": "Simulate an relational matrix based on a relative rank nomination scheme",
      "topics": [
        "simY_rrl"
      ]
    },
    {
      "page": "simY_tob",
      "title": "Simulate a tobit relational matrix",
      "topics": [
        "simY_tob"
      ]
    },
    {
      "page": "simZ",
      "title": "Simulate Z given its expectation and covariance",
      "topics": [
        "simZ"
      ]
    },
    {
      "page": "sm2el",
      "title": "Sociomatrix to edgelist",
      "topics": [
        "sm2el"
      ]
    },
    {
      "page": "summary.ame",
      "title": "Summary of an AME object",
      "topics": [
        "summary.ame"
      ]
    },
    {
      "page": "Xbeta",
      "title": "Linear combinations of submatrices of an array",
      "topics": [
        "Xbeta"
      ]
    },
    {
      "page": "xnet",
      "title": "Network embedding",
      "topics": [
        "xnet"
      ]
    },
    {
      "page": "YX_bin",
      "title": "binary relational data and covariates",
      "topics": [
        "YX_bin"
      ]
    },
    {
      "page": "YX_bin_long",
      "title": "binary relational data and covariates",
      "topics": [
        "YX_bin_long"
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